CESSHIV-1 database

General information on HIV-1 isolate

# 202

Accession number	AF443104
Name	00BW2087.2
Subtype	C
Country	Botswana
Sampling year	2000
Patient	20872

AF443104 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286225(#98) AY772692(#405) AY772693(#406) AY901968(#431) DQ011165(#455) DQ093602(#506) DQ164114(#551) DQ164122(#559) DQ275661(#1239) DQ396374(#696) DQ396375(#697) DQ396399(#721)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy