CESSHIV-1 database

General information on HIV-1 isolate

# 696

Accession number	DQ396374
Name	03ZAPS056MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	056MB

DQ396374 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

AF286225(#98) AF443104(#202) AY772692(#405) AY772693(#406) AY901968(#431) DQ011165(#455) DQ093602(#506) DQ164114(#551) DQ164122(#559) DQ275661(#1239) DQ396375(#697) DQ396399(#721)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy