CESSHIV-1 database

General information on HIV-1 isolate

# 696

Accession number	DQ396374
Name	03ZAPS056MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	056MB

DQ396374 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy