CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1408
Accession number AF539405
Name ML170_1986
SubtypeA1
CountryKenya
Sampling year 1986
PatientML170

AF539405 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc tat--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AF539404(#1407) AF539406(#1409)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy