CESSHIV-1 database

General information on HIV-1 isolate

# 1552

Accession number	AM076851
Name	PG6_10
Subtype	C
Country	Mozambique
Sampling year	2003
Patient	PG6

AM076851 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076852(#1553) AM076868(#1570) DQ056417(#487) DQ351234(#633) DQ369985(#651) DQ396381(#703) EU786673(#1186)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy