CESSHIV-1 database

General information on HIV-1 isolate

# 703

Accession number	DQ396381
Name	04ZASK169B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	169B1

DQ396381 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcggctgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076851(#1552) AM076852(#1553) AM076868(#1570) DQ056417(#487) DQ351234(#633) DQ369985(#651) EU786673(#1186)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy