CESSHIV-1 database

General information on HIV-1 isolate

# 1992

Accession number	AY118161
Name	93CB76
Subtype	CRF02_AG
Country	Caribbean
Sampling year	1993
Patient	93CB76

AY118161 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaa--ttttgac tagcggaggc tagaaggaga ga

Isolates with identical sequences of region:

AY118156(#1989) DQ366659(#820)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy