CESSHIV-1 database

General information on HIV-1 isolate

# 1992

Accession number	AY118161
Name	93CB76
Subtype	CRF02_AG
Country	Caribbean
Sampling year	1993
Patient	93CB76

AY118161 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing 123 nt 3' terminus

The primary sequence:

cactgcttaa gcctcaataa agcttgcctt gagtgcttca agtagtgtgt gcccgtctgt tgtgtgactc tggtaactag agatccctca gaccactcta gactgtgta-a aaatctctag ca

Isolates with identical sequences of region:

AF096633(#1914) AF096636(#1917) AF196743(#1309) AY118156(#1989) AY932653(#2123)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy