CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 298
Accession number AY169803
Name 96CMA102
SubtypeGroup O
CountryCameroon
Sampling year 1996
Patient102

AY169803 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgag-----ag gactcac-aga gggtgagtaa aattg-ctggc ggtggccaga cctaggggaa gggcgaagtc cctaggggag gaa

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012