CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 298
Accession number AY169803
Name 96CMA102
SubtypeGroup O
CountryCameroon
Sampling year 1996
Patient102

AY169803 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttca---accc tggtgtctag agatccctca gatcacgt-ag actgaagcga aaatctctag cagtggcgcc cgaacaggga ccggaa-gaga aagtgaaacc agggaagaaa ac-ctc-cgacg caacgggc

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012