CESSHIV-1 database

General information on HIV-1 isolate

# 301

Accession number	AY169807
Name	98CMABB141
Subtype	Group O
Country	Cameroon
Sampling year	1998
Patient	141

AY169807 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacctgctaa gaggcgag-----ag gaactcacag gg-gtgagtaa atttg-ctggc ggtggccaga cctaggggaa gggcgaagtc tctaggggag gaa

Isolates with identical sequences of region:

AB485668(#2759) AB485669(#2760) AY169805(#300)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy