CESSHIV-1 database

General information on HIV-1 isolate

# 305

Accession number	AY169812
Name	98CMU2901
Subtype	Group O
Country	Cameroon
Sampling year	1998
Patient	2901

AY169812 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tagcggagtg cacccgctaa gaggcgagag gaactcacag a-gaggt-gagt aaaattt-g-ct ggcggtggcc agacctaggg gaagggcgaa gtctctaggg gaggaa

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy