CESSHIV-1 database

General information on HIV-1 isolate

# 288

Accession number	AY423382
Name	671-00T93
Subtype	B
Country	Netherlands
Sampling year	2000
Patient	H671

AY423382 isolate has foldings of [DIS region] [PBS region] [Core poly(A) site] [123nt 3' terminus] [USE domain, TAR, polyA] [USE region] [227nt 3' terminus] [Complete poly(A) region] [USE, TAR, polyA] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagaa gaagcgcgcg cggcaagagg cgaggggcgg cgactggtga gtacgcctaa aattttgact agcggaggct agaaggagag a

Isolates with identical sequences of region:

AY423381(#287) AY423383(#289) AY423384(#290) AY423385(#291) AY423386(#292)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy