CESSHIV-1 database

General information on HIV-1 isolate

# 287

Accession number	AY423381
Name	671-99T12
Subtype	B
Country	Netherlands
Sampling year	1999
Patient	H671

AY423381 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagaa gaagcgcgcg cggcaagagg cgaggggcgg cgactggtga gtacgcctaa aattttgact agcggaggct agaaggagag a

Isolates with identical sequences of region:

AY423382(#288) AY423383(#289) AY423384(#290) AY423385(#291) AY423386(#292)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy