CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 287
Accession number AY423381
Name 671-99T12
SubtypeB
CountryNetherlands
Sampling year 1999
PatientH671

AY423381 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttatgtga ctctggtaac tagagatccc tcagaccctt ttagtcagtg tggaaaatct ctagcagtgg cgcccgaaca gggactkgaa agcgaaagta aaaccagagg agatctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012