CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 396
Accession number AY455779
Name 94BR-RJ-97
SubtypeBF
CountryBrazil
Sampling year 1994
PatientBR97

AY455779 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cgcacggcaa gaggcgaggg gcggcgactg gtgagtactg cctaaatatt gactatgcgg aggctagaag gagaga

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012