CESSHIV-1 database

General information on HIV-1 isolate

# 339

Accession number	AY500393
Name	03RU20-06-13
Subtype	A1
Country	Russia
Sampling year	2003
Patient	RU20

AY500393 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaggtg cacacggcaa gaggcggagc gcggcgactg gtgagtacgc ctaagatttt tgactagcgg aggctagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy