CESSHIV-1 database

General information on HIV-1 isolate

# 339

Accession number	AY500393
Name	03RU20-06-13
Subtype	A1
Country	Russia
Sampling year	2003
Patient	RU20

AY500393 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtctga ctctggtaac tagagatccc tcagaccact ctaggcagtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtt---c cagagaagtt ctctcgacgc agggc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy