CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1646
Accession number AY857101
Name 6700728
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient6700728

AY857101 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctga-gcgc gcacggcaag aggcgagggg cggcgactgg tgagtacgcc aaaaaacttt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

EF178385(#1688)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy