CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1656
Accession number AY857160
Name 9050046
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient9050046

AY857160 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggc gaggcgactg gtgagtaccc caaaaatttt tttgactagc ggaggctaga aggagara

Isolates with identical sequences of region:

EF178310(#1608)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy