CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1657
Accession number AY857162
Name 9060341
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient9060341

AY857162 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagcg cgcacagcaa gaggcgaggg gcggcgactg gtgagtacgc caaaaaattt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF178352(#1679)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy