CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1658
Accession number AY857171
Name 9300435
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient9300435

AY857171 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagyg cgcacggcaa gaggcgaggg gcggcgactg gtgagtacgc cgaaaatttt ttgactagcg gaggctagaa ggagaga

Isolates with identical sequences of region:

EF178397(#1691)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy