CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 1645
Accession number AY857180
Name 9590727
SubtypeB
CountryAustralia
Submitted to NCBI 2004
Patient9590727

AY857180 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagc gcgctcggca agaggcgagg ggyggcgact ggtgagtacg ccaaaa-tttt gactagcgga ggctagaagg agaga

Isolates with identical sequences of region:

EF178314(#1610)

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy