CESSHIV-1 database

General information on HIV-1 isolate

# 516

Accession number	AY878058
Name	04ZASK168B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-168

AY878058 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF411967(#238) AF443109(#207) AM076859(#1561) AM076860(#1562) AY463228(#326) AY878054(#512) DQ011172(#462) DQ011174(#464) DQ056410(#480) DQ093591(#495) DQ093605(#509) DQ369977(#643) DQ396368(#690)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy