CESSHIV-1 database

General information on HIV-1 isolate

# 516

Accession number	AY878058
Name	04ZASK168B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-168

AY878058 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tctggtaata ctctggtaac tagagatccc tcagaccctt gttggttgcg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta aaaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy