CESSHIV-1 database

General information on HIV-1 isolate

# 528

Accession number	AY878070
Name	03ZASK094B1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	SK-094

AY878070 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076885(#1587) DQ093606(#510) DQ275660(#1238)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy