CESSHIV-1 database

General information on HIV-1 isolate

# 1238

Accession number	DQ275660
Name	03ZASK013B2
Subtype	C
Country	South Africa
Sampling year	2003
Patient	013B2

DQ275660 isolate has foldings of [DIS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AM076885(#1587) AY878070(#528) DQ093606(#510)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy