CESSHIV-1 database

General information on HIV-1 isolate

# 540

Accession number	AY882421
Name	9196/01
Subtype	BG
Country	Germany (Portugal)
Sampling year	2001
Patient	9196

AY882421 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgg-gtgc acacagcaag aggcgagag-c ggcgactggt gagtacgcca taaattttga ctagcggagg ctagaaggag aga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy