CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 540
Accession number AY882421
Name 9196/01
SubtypeBG
CountryGermany (Portugal)
Sampling year 2001
Patient9196

AY882421 isolate has foldings of [DIS region] [PBS region] [123nt 3' terminus] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctaaatagtg t--aaaatctct agcagtggcg cccgaacagg gacttgaaag cgaaagtaac agggactcga aagcgaaagt t---ccagagaag ttctctcgac gcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012