CESSHIV-1 database

General information on HIV-1 isolate

# 638

Accession number	AY900572
Name	CB347
Subtype	CRF23_BG
Country	Cuba
Sampling year	2003
Patient	CB347

AY900572 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc aaactttttg actagcggag gctagaagga gaga

Isolates with identical sequences of region:

AY586544(#672) AY586545(#673) AY586546(#674) AY586547(#675) AY900574(#639) AY900575(#640) AY900576(#641) AY900578(#1426) DQ020274(#754)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy