CESSHIV-1 DATABASE

Control Elements Secondary Structures of HIV-1 genome

General information on HIV-1 isolate

# 638
Accession number AY900572
Name CB347
SubtypeCRF23_BG
CountryCuba
Sampling year 2003
PatientCB347

AY900572 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccact ctagacagtg ta-aaaatctc tagcagtggc gcccgaacag ggacttgaaa gtgaaagtta aaagggactc gaaagcggaa gtt---ccagaga agttctctcg acgcaggac

The optimal secondary structure:


The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy

STCU 2008-2010
Institute of Molecular Biology and Genetics 2008-2012