CESSHIV-1 database

General information on HIV-1 isolate

# 489

Accession number	DQ093585
Name	04ZASK083B2
Subtype	C
Country	South Africa
Sampling year	2004
Patient	083B2

DQ093585 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaaagt gcactcggca agaggcgagg gg-ggcgactg gtgagtacgc caaattttat ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy