CESSHIV-1 database

General information on HIV-1 isolate

# 491

Accession number	DQ093587
Name	04ZASK178B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	178B1

DQ093587 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ275646(#1224) DQ351223(#622) DQ396369(#691)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy