CESSHIV-1 database

General information on HIV-1 isolate

# 622

Accession number	DQ351223
Name	03ZAPS027MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	027MB

DQ351223 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ093587(#491) DQ275646(#1224) DQ396369(#691)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy