CESSHIV-1 database

General information on HIV-1 isolate

# 502

Accession number	DQ093598
Name	04ZAPS202B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	202B1

DQ093598 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cacttggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy