CESSHIV-1 database

General information on HIV-1 isolate

# 502

Accession number	DQ093598
Name	04ZAPS202B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	202B1

DQ093598 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy