CESSHIV-1 database

General information on HIV-1 isolate

# 462

Accession number	DQ011172
Name	04ZASK127B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	SK-127

DQ011172 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccttt ttggt-agtgt ggaaaatctc tagcagtggc gcccgaacag ggacttgaaa gcgaaagtaa gaccagagga gatctctcga cgcaggac

Isolates with identical sequences of region:

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy