CESSHIV-1 database

General information on HIV-1 isolate

# 555

Accession number	DQ164118
Name	04ZAPS195B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	195B1

DQ164118 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcag aggctagaag gagaga

Isolates with identical sequences of region:

AF067156(#55) AM076846(#1546) DQ351229(#628)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy