CESSHIV-1 database

General information on HIV-1 isolate

# 555

Accession number	DQ164118
Name	04ZAPS195B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	195B1

DQ164118 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccctt tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgtaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy