CESSHIV-1 database

General information on HIV-1 isolate

# 620

Accession number	DQ351221
Name	04ZAPS165MB1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	165MB

DQ351221 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag g-ggcgactgg tgagtacgcc aatttttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AB097871(#270) AY049708(#231) AY049710(#233) AY049711(#234) DQ093593(#497) DQ164115(#552) DQ369998(#664)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy