CESSHIV-1 database

General information on HIV-1 isolate

# 621

Accession number	DQ351222
Name	02ZAPS013MB1
Subtype	C
Country	South Africa
Sampling year	2002
Patient	013MB

DQ351222 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc gaattttatt tgactagcgg aggttagaag gagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy