CESSHIV-1 database

General information on HIV-1 isolate

# 626

Accession number	DQ351227
Name	03ZAPS043MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	043MB

DQ351227 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag a-ggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF443077(#175) AY118166(#281) AY162225(#241)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy