CESSHIV-1 database

General information on HIV-1 isolate

# 649

Accession number	DQ369983
Name	05ZASK246B1
Subtype	C
Country	South Africa
Sampling year	2005
Patient	246B1

DQ369983 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ056414(#484) DQ396383(#705)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy