CESSHIV-1 database

General information on HIV-1 isolate

# 705

Accession number	DQ396383
Name	04ZASK200B1
Subtype	C
Country	South Africa
Sampling year	2004
Patient	200B1

DQ396383 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

agactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

DQ056414(#484) DQ369983(#649)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy