CESSHIV-1 database

General information on HIV-1 isolate

# 688

Accession number	DQ396366
Name	04ZASK052MB2
Subtype	C
Country	South Africa
Sampling year	2004
Patient	052MB

DQ396366 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaagtg cactcggcaa gaggcgagag -cggcgactgg tgagtacgcc aaattttatt tgactagcgg aggctagaag gagaga

Isolates with identical sequences of region:

AF067154(#53) AF443110(#208) AF443112(#210) AM076887(#1589) AY158533(#251) AY463224(#322) AY463227(#325) AY878059(#517) AY901965(#428) AY901971(#434) AY901977(#440) DQ011168(#458) DQ056409(#479) DQ056411(#481) DQ093596(#500) DQ164106(#543) DQ275649(#1227) DQ369981(#647) DQ445634(#681) DQ445636(#683) DQ978981(#827) GQ999984(#3374)

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy