CESSHIV-1 database

General information on HIV-1 isolate

# 688

Accession number	DQ396366
Name	04ZASK052MB2
Subtype	C
Country	South Africa
Sampling year	2004
Patient	052MB

DQ396366 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtga ctctggtaac tagagatccc tcagaccatt tgtggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta gaaccagagg agatctctcg acgcaggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy