CESSHIV-1 database

General information on HIV-1 isolate

# 693

Accession number	DQ396371
Name	03ZAPS155MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	155MB

DQ396371 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

gggctcggct tgctgaagtg cactcggcaa gaggcgagag -cggcggctag tgagtacgcc aattttattt gactagcgga ggctagaagg agaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy