CESSHIV-1 database

General information on HIV-1 isolate

# 693

Accession number	DQ396371
Name	03ZAPS155MB1
Subtype	C
Country	South Africa
Sampling year	2003
Patient	155MB

DQ396371 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagacctct tttggtagtg tggaaaatct ctagcagtgg cgcccgaaca gggacttgaa agcgaaagta agaccagagg agatctctcg acgcagggc

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy