CESSHIV-1 database

General information on HIV-1 isolate

# 722

Accession number	DQ396400
Name	04ZASK162B1
Subtype	A1
Country	South Africa
Sampling year	2004
Patient	162B1

DQ396400 isolate has foldings of [DIS region] [PBS region] .

The region encompassing DIS SD and Psi hairpins

The primary sequence:

ggactcggct tgctgaggtg cacacagcaa gaggcgagag -cggcgactgg tgagtacgcc gggaaatttt ttgactagcg gaggctagaa ggagaga

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy