CESSHIV-1 database

General information on HIV-1 isolate

# 722

Accession number	DQ396400
Name	04ZASK162B1
Subtype	A1
Country	South Africa
Sampling year	2004
Patient	162B1

DQ396400 isolate has foldings of [DIS region] [PBS region] .

The region encompassing PBS domain

The primary sequence:

tgttgtgtgg ctctggtaac tagagatccc tcagaccact ctagactgag tagaaa-tctc tagcagtggc gcccgaacag ggactcgaaa gcgaaagtt---c cagagaagtt ctctcgacgc aggac

The optimal secondary structure:

The suboptimal structures within ΔΔG ≤ 4 kcal/mole of the minimum free energy